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blounsbury-usbr opened this issue Sep 23, 2012 · 13 comments
Closed

pip install pandas fails on Mageia #1955

blounsbury-usbr opened this issue Sep 23, 2012 · 13 comments
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Build Library building on various platforms
Milestone
0.9

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@blounsbury-usbr
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As title says, I get an error trying to pip install pandas on Mageia. Unfortunately, there is no pre-built pandas package in the Mageia repositories. Don't know if I should post the issue here with pandas or if it is Mageia related. The error is:

pandas/src/generated.c:237:31: fatal error: numpy/arrayobject.h: No such file or directory

compilation terminated.

error: command 'gcc' failed with exit status 1

I have the necessary pandas dependencies, as shown in the pip.log:

Requirement already satisfied (use --upgrade to upgrade): python-dateutil<2 in    /usr/lib/python2.7/site-packages (from pandas)

Requirement already satisfied (use --upgrade to upgrade): pytz in /usr/lib/python2.7/site-packages (from pandas)

Requirement already satisfied (use --upgrade to upgrade): numpy>=1.6 in /usr/lib/python2.7/site-packages (from pandas)

Thanks,
Bob
@wesm
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wesm commented Sep 24, 2012

That's weird. What does

import numpy as np
print np.get_include()

print out? (and what files are in that include directory?)

@blounsbury-usbr
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Agree, very strange.

>>> print np.get_include()
/usr/lib/python2.7/site-packages/numpy/core/include

$ ls /usr/lib/python2.7/site-packages/numpy/core/include
ls: cannot access /usr/lib/python2.7/site-packages/numpy/core/include: No such file or directory

There is no 'include' directory???

@blounsbury-usbr
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Looks like 'core/include' is included in the 'python-numpy-devel' package on Mageia.

Next error message...

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_pf_6pandas_3lib_104roll_skew':

/tmp/pip-build/pandas/pandas/src/tseries.c:69639: undefined reference to `sqrt'

/tmp/pip-build/pandas/pandas/src/tseries.c:69648: undefined reference to `sqrt'

collect2: ld returned 1 exit status

error: command 'gcc' failed with exit status 1

@wesm
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wesm commented Sep 24, 2012

Also weird. Can you paste the full console output including the compiler commands?

@blounsbury-usbr
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$ sudo pip install pandas
[sudo] password for bob: 
Downloading/unpacking pandas
  Running setup.py egg_info for package pandas

    warning: no files found matching 'setupegg.py'
    no previously-included directories found matching 'doc/build'
    warning: no previously-included files matching '*.so' found anywhere in distribution
    warning: no previously-included files matching '*.pyd' found anywhere in distribution
    warning: no previously-included files matching '*.pyc' found anywhere in distribution
    warning: no previously-included files matching '.git*' found anywhere in distribution
    warning: no previously-included files matching '.DS_Store' found anywhere in distribution
    warning: no previously-included files matching '*.png' found anywhere in distribution
Requirement already satisfied (use --upgrade to upgrade): python-dateutil<2 in /usr/lib/python2.7/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): pytz in /usr/lib/python2.7/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.6 in /usr/lib/python2.7/site-packages (from pandas)
Installing collected packages: pandas
  Running setup.py install for pandas
    building 'pandas.lib' extension
    gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/tseries.c -o build/temp.linux-i686-2.7/pandas/src/tseries.o
    gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
    gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime_strings.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o
    pandas/src/datetime/np_datetime_strings.c: In function ‘make_iso_8601_datetime’:
    pandas/src/datetime/np_datetime_strings.c:1149:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]
    pandas/src/datetime/np_datetime_strings.c:1149:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]
    gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/tseries.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/pandas/lib.so
    build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_f_6pandas_3lib_Log2':
    /tmp/pip-build/pandas/pandas/src/tseries.c:42837: undefined reference to `log'
    build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_pf_6pandas_3lib_101nancorr':
    /tmp/pip-build/pandas/pandas/src/tseries.c:68275: undefined reference to `sqrt'
    build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_f_6pandas_3lib_Log2':
    /tmp/pip-build/pandas/pandas/src/tseries.c:42837: undefined reference to `log'
    build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `Log2':
    /tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'
    /tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'
    /tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'
    build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_pf_6pandas_3lib_104roll_skew':
    /tmp/pip-build/pandas/pandas/src/tseries.c:69639: undefined reference to `sqrt'
    /tmp/pip-build/pandas/pandas/src/tseries.c:69648: undefined reference to `sqrt'
    collect2: ld returned 1 exit status
    error: command 'gcc' failed with exit status 1
    Complete output from command /usr/bin/python -c "import setuptools;__file__='/tmp/pip-build/pandas/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-yJBG1p-record/install-record.txt --single-version-externally-managed:
    running install

running build

running build_py

copying pandas/version.py -> build/lib.linux-i686-2.7/pandas

running build_ext

building 'pandas.lib' extension

gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/tseries.c -o build/temp.linux-i686-2.7/pandas/src/tseries.o

gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o

gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime_strings.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o

pandas/src/datetime/np_datetime_strings.c: In function ‘make_iso_8601_datetime’:

pandas/src/datetime/np_datetime_strings.c:1149:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]

pandas/src/datetime/np_datetime_strings.c:1149:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]

gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/tseries.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/pandas/lib.so

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_f_6pandas_3lib_Log2':

/tmp/pip-build/pandas/pandas/src/tseries.c:42837: undefined reference to `log'

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_pf_6pandas_3lib_101nancorr':

/tmp/pip-build/pandas/pandas/src/tseries.c:68275: undefined reference to `sqrt'

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_f_6pandas_3lib_Log2':

/tmp/pip-build/pandas/pandas/src/tseries.c:42837: undefined reference to `log'

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `Log2':

/tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'

/tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'

/tmp/pip-build/pandas/pandas/src/skiplist.h:40: undefined reference to `log'

build/temp.linux-i686-2.7/pandas/src/tseries.o: In function `__pyx_pf_6pandas_3lib_104roll_skew':

/tmp/pip-build/pandas/pandas/src/tseries.c:69639: undefined reference to `sqrt'

/tmp/pip-build/pandas/pandas/src/tseries.c:69648: undefined reference to `sqrt'

collect2: ld returned 1 exit status

error: command 'gcc' failed with exit status 1

----------------------------------------
Command /usr/bin/python -c "import setuptools;__file__='/tmp/pip-build/pandas/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-yJBG1p-record/install-record.txt --single-version-externally-managed failed with error code 1 in /tmp/pip-build/pandas
Storing complete log in /root/.pip/pip.log

@wesm
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wesm commented Sep 24, 2012

OK, it looks like your platform requires an explicit linking to the math library (-lm). I need to test and see if this causes an issue on Windows but will otherwise make the change...

@blounsbury-usbr
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Great. Thanks.

In the meantime, I'll submit a request to add 'python-pandas?' to the Mageia repositories.

@wesm wesm closed this as completed in 44a2734 Sep 26, 2012
@wesm
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wesm commented Sep 26, 2012

master revision should build now (added math library to link)

yarikoptic added a commit to neurodebian/pandas that referenced this issue Sep 27, 2012
@yarikoptic
Merge tag 'v0.9.0rc2' into debian
20c6c91 
Version 0.9.0 Release Candidate 2

* tag 'v0.9.0rc2':
  DOC: release notes, bump to RC2
  DOC: missed a few for release notes 0.9
  DOC: add a few more notes on bug fixes in release.rst
  BUG: repr fix for all-NA index level. close pandas-dev#1971
  BLD: don't link against math library on windows
  TST: kludge around test failure on win64 python 3.2.2
  BLD: link against math library explicitly. close pandas-dev#1955
  DOC: Add line about resetting to default index
  DOC: Adding details on normalization for variance functions.
  DOC: Specify default merge behavior for on = None
  BUG: PeriodIndex slicing by datetime fails when either end out-of-bounds pandas-dev#1977
  BUG: read_table unicode bug pandas-dev#1975
  BUG: BlockManager.iget fails with non-unique MultiIndex pandas-dev#1970
  Better error message for DataFrame.apply if axis is not 0 or 1
  TST: fix up tzlocal test cases
  DOC: add level option in Series.reset_index to release notes
  ENH: level parameter for Series.reset_index
@blounsbury-usbr
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Still not working with version below.

[bob@darkstar pandas-0.9.0rc2]$ sudo python setup.py install
running install
running bdist_egg
running egg_info
creating pandas.egg-info
writing requirements to pandas.egg-info/requires.txt
writing pandas.egg-info/PKG-INFO
writing top-level names to pandas.egg-info/top_level.txt
writing dependency_links to pandas.egg-info/dependency_links.txt
writing manifest file 'pandas.egg-info/SOURCES.txt'
reading manifest file 'pandas.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'setupegg.py'
no previously-included directories found matching 'doc/build'
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
warning: no previously-included files matching '*.png' found anywhere in distribution
writing manifest file 'pandas.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-i686/egg
running install_lib
running build_py
creating build
creating build/lib.linux-i686-2.7
creating build/lib.linux-i686-2.7/pandas
copying pandas/setup.py -> build/lib.linux-i686-2.7/pandas
copying pandas/info.py -> build/lib.linux-i686-2.7/pandas
copying pandas/version.py -> build/lib.linux-i686-2.7/pandas
copying pandas/__init__.py -> build/lib.linux-i686-2.7/pandas
creating build/lib.linux-i686-2.7/pandas/compat
copying pandas/compat/scipy.py -> build/lib.linux-i686-2.7/pandas/compat
copying pandas/compat/__init__.py -> build/lib.linux-i686-2.7/pandas/compat
creating build/lib.linux-i686-2.7/pandas/core
copying pandas/core/index.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/daterange.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/format.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/groupby.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/nanops.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/generic.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/series.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/datetools.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/api.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/categorical.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/internals.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/frame.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/panel.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/matrix.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/reshape.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/common.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/strings.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/indexing.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/algorithms.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/sparse.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/__init__.py -> build/lib.linux-i686-2.7/pandas/core
creating build/lib.linux-i686-2.7/pandas/io
copying pandas/io/date_converters.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/data.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/parsers.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/pytables.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/sql.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/__init__.py -> build/lib.linux-i686-2.7/pandas/io
creating build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/mass.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/common.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/vars.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/base.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/__init__.py -> build/lib.linux-i686-2.7/pandas/rpy
creating build/lib.linux-i686-2.7/pandas/sandbox
copying pandas/sandbox/qtpandas.py -> build/lib.linux-i686-2.7/pandas/sandbox
copying pandas/sandbox/__init__.py -> build/lib.linux-i686-2.7/pandas/sandbox
creating build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/array.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/series.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/api.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/frame.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/panel.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/list.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/__init__.py -> build/lib.linux-i686-2.7/pandas/sparse
creating build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_array.py -> build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_list.py -> build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_sparse.py -> build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_libsparse.py -> build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/sparse/tests
creating build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/math.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/fama_macbeth.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/api.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/misc.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/common.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/ols.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/var.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/moments.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/interface.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/plm.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/__init__.py -> build/lib.linux-i686-2.7/pandas/stats
creating build/lib.linux-i686-2.7/pandas/util
copying pandas/util/terminal.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/clipboard.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/misc.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/testing.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/counter.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/decorators.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/compat.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/py3compat.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/__init__.py -> build/lib.linux-i686-2.7/pandas/util
creating build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_stats.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_series.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_groupby.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_factor.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_format.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_common.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_multilevel.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_internals.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_algos.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_ndframe.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_graphics.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_reshape.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_tseries.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_index.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_frame.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_panel.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_strings.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/tests
creating build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/util.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/tile.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/pivot.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/describe.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/plotting.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/merge.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/__init__.py -> build/lib.linux-i686-2.7/pandas/tools
creating build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_pivot.py -> build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_tile.py -> build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_tools.py -> build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_merge.py -> build/lib.linux-i686-2.7/pandas/tools/tests
creating build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/frequencies.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/resample.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/index.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/util.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/tools.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/api.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/offsets.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/plotting.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/converter.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/period.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/interval.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/__init__.py -> build/lib.linux-i686-2.7/pandas/tseries
creating build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_plotting.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_cursor.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_frequencies.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_timezones.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_resample.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_daterange.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_util.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_timeseries.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_period.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_offsets.py -> build/lib.linux-i686-2.7/pandas/tseries/tests
creating build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_pytables.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_date_converters.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_yahoo.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_parsers.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_sql.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/io/tests
creating build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_fama_macbeth.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_moments.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_ols.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/common.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_math.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/__init__.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_var.py -> build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/io/tests/legacy.h5 -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test2.csv -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test1.csv -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test2.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test3.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test.xlsx -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/salary.table -> build/lib.linux-i686-2.7/pandas/io/tests
creating build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/mindex_073.pickle -> build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/multiindex_v1.pickle -> build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/iris.csv -> build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/unicode_series.csv -> build/lib.linux-i686-2.7/pandas/tests/data
creating build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/series_daterange0.pickle -> build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/daterange_073.pickle -> build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/frame.pickle -> build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/series.pickle -> build/lib.linux-i686-2.7/pandas/tseries/tests/data
running build_ext
building 'pandas._algos' extension
creating build/temp.linux-i686-2.7
creating build/temp.linux-i686-2.7/pandas
creating build/temp.linux-i686-2.7/pandas/src
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/generated.c -o build/temp.linux-i686-2.7/pandas/src/generated.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/generated.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/pandas/_algos.so
building 'pandas.lib' extension
creating build/temp.linux-i686-2.7/pandas/src/datetime
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/tseries.c -o build/temp.linux-i686-2.7/pandas/src/tseries.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime_strings.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o
pandas/src/datetime/np_datetime_strings.c: In function ‘make_iso_8601_datetime’:
pandas/src/datetime/np_datetime_strings.c:1151:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]
pandas/src/datetime/np_datetime_strings.c:1151:5: warning: format ‘%Ld’ expects argument of type ‘long long int’, but argument 4 has type ‘long int’ [-Wformat]
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/tseries.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o -L/usr/lib -lm -lpython2.7 -o build/lib.linux-i686-2.7/pandas/lib.so
building 'pandas._period' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/plib.c -o build/temp.linux-i686-2.7/pandas/src/plib.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/period.c -o build/temp.linux-i686-2.7/pandas/src/period.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/plib.o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o build/temp.linux-i686-2.7/pandas/src/period.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/pandas/_period.so
building 'pandas._sparse' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw -DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586 -mtune=generic -fasynchronous-unwind-tables -g -fPIC -I/usr/lib/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c pandas/src/sparse.c -o build/temp.linux-i686-2.7/pandas/src/sparse.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags build/temp.linux-i686-2.7/pandas/src/sparse.o -L/usr/lib -lpython2.7 -o build/lib.linux-i686-2.7/pandas/_sparse.so
build/temp.linux-i686-2.7/pandas/src/sparse.o: In function `__pyx_f_6pandas_7_sparse___pow':
/home/bob/Downloads/pandas-0.9.0rc2/pandas/src/sparse.c:13907: undefined reference to `pow'
/home/bob/Downloads/pandas-0.9.0rc2/pandas/src/sparse.c:13907: undefined reference to `pow'
collect2: ld returned 1 exit status
error: command 'gcc' failed with exit status 1

@wesm
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wesm commented Sep 28, 2012

Thanks-- missed the math.h usage in the sparse extension. Will fix

Sent from my mobile device

On Sep 27, 2012, at 7:26 PM, bobl2424 [email protected] wrote:

Still not working with version below.

[bob@darkstar pandas-0.9.0rc2]$ sudo python setup.py install
running install
running bdist_egg
running egg_info
creating pandas.egg-info
writing requirements to pandas.egg-info/requires.txt
writing pandas.egg-info/PKG-INFO
writing top-level names to pandas.egg-info/top_level.txt
writing dependency_links to pandas.egg-info/dependency_links.txt
writing manifest file 'pandas.egg-info/SOURCES.txt'
reading manifest file 'pandas.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'setupegg.py'
no previously-included directories found matching 'doc/build'
warning: no previously-included files matching '.so' found anywhere
in distribution
warning: no previously-included files matching '.pyd' found anywhere
in distribution
warning: no previously-included files matching '.pyc' found anywhere
in distribution
warning: no previously-included files matching '.git' found anywhere
in distribution
warning: no previously-included files matching '.DS_Store' found
anywhere in distribution
warning: no previously-included files matching '*.png' found anywhere
in distribution
writing manifest file 'pandas.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-i686/egg
running install_lib
running build_py
creating build
creating build/lib.linux-i686-2.7
creating build/lib.linux-i686-2.7/pandas
copying pandas/setup.py -> build/lib.linux-i686-2.7/pandas
copying pandas/info.py -> build/lib.linux-i686-2.7/pandas
copying pandas/version.py -> build/lib.linux-i686-2.7/pandas
copying pandas/init.py -> build/lib.linux-i686-2.7/pandas
creating build/lib.linux-i686-2.7/pandas/compat
copying pandas/compat/scipy.py -> build/lib.linux-i686-2.7/pandas/compat
copying pandas/compat/init.py -> build/lib.linux-i686-2.7/pandas/compat
creating build/lib.linux-i686-2.7/pandas/core
copying pandas/core/index.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/daterange.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/format.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/groupby.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/nanops.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/generic.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/series.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/datetools.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/api.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/categorical.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/internals.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/frame.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/panel.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/matrix.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/reshape.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/common.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/strings.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/indexing.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/algorithms.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/sparse.py -> build/lib.linux-i686-2.7/pandas/core
copying pandas/core/init.py -> build/lib.linux-i686-2.7/pandas/core
creating build/lib.linux-i686-2.7/pandas/io
copying pandas/io/date_converters.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/data.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/parsers.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/pytables.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/sql.py -> build/lib.linux-i686-2.7/pandas/io
copying pandas/io/init.py -> build/lib.linux-i686-2.7/pandas/io
creating build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/mass.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/common.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/vars.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/base.py -> build/lib.linux-i686-2.7/pandas/rpy
copying pandas/rpy/init.py -> build/lib.linux-i686-2.7/pandas/rpy
creating build/lib.linux-i686-2.7/pandas/sandbox
copying pandas/sandbox/qtpandas.py -> build/lib.linux-i686-2.7/pandas/sandbox
copying pandas/sandbox/init.py -> build/lib.linux-i686-2.7/pandas/sandbox
creating build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/array.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/series.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/api.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/frame.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/panel.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/list.py -> build/lib.linux-i686-2.7/pandas/sparse
copying pandas/sparse/init.py -> build/lib.linux-i686-2.7/pandas/sparse
creating build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_array.py ->
build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_list.py ->
build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_sparse.py ->
build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/test_libsparse.py ->
build/lib.linux-i686-2.7/pandas/sparse/tests
copying pandas/sparse/tests/init.py ->
build/lib.linux-i686-2.7/pandas/sparse/tests
creating build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/math.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/fama_macbeth.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/api.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/misc.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/common.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/ols.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/var.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/moments.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/interface.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/plm.py -> build/lib.linux-i686-2.7/pandas/stats
copying pandas/stats/init.py -> build/lib.linux-i686-2.7/pandas/stats
creating build/lib.linux-i686-2.7/pandas/util
copying pandas/util/terminal.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/clipboard.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/misc.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/testing.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/counter.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/decorators.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/compat.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/py3compat.py -> build/lib.linux-i686-2.7/pandas/util
copying pandas/util/init.py -> build/lib.linux-i686-2.7/pandas/util
creating build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_stats.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_series.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_groupby.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_factor.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_format.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_common.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_multilevel.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_internals.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_algos.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_ndframe.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_graphics.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_reshape.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_tseries.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_index.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_frame.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_panel.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/test_strings.py -> build/lib.linux-i686-2.7/pandas/tests
copying pandas/tests/init.py -> build/lib.linux-i686-2.7/pandas/tests
creating build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/util.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/tile.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/pivot.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/describe.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/plotting.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/merge.py -> build/lib.linux-i686-2.7/pandas/tools
copying pandas/tools/init.py -> build/lib.linux-i686-2.7/pandas/tools
creating build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_pivot.py ->
build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_tile.py ->
build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_tools.py ->
build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/init.py ->
build/lib.linux-i686-2.7/pandas/tools/tests
copying pandas/tools/tests/test_merge.py ->
build/lib.linux-i686-2.7/pandas/tools/tests
creating build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/frequencies.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/resample.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/index.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/util.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/tools.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/api.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/offsets.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/plotting.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/converter.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/period.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/interval.py -> build/lib.linux-i686-2.7/pandas/tseries
copying pandas/tseries/init.py -> build/lib.linux-i686-2.7/pandas/tseries
creating build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_plotting.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_cursor.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_frequencies.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_timezones.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_resample.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_daterange.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_util.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_timeseries.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_period.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/init.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
copying pandas/tseries/tests/test_offsets.py ->
build/lib.linux-i686-2.7/pandas/tseries/tests
creating build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_pytables.py ->
build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_date_converters.py ->
build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_yahoo.py ->
build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_parsers.py ->
build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test_sql.py -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/init.py -> build/lib.linux-i686-2.7/pandas/io/tests
creating build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_fama_macbeth.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_moments.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_ols.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/common.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_math.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/init.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/stats/tests/test_var.py ->
build/lib.linux-i686-2.7/pandas/stats/tests
copying pandas/io/tests/legacy.h5 -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test2.csv -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test1.csv -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test2.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test3.xls -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/test.xlsx -> build/lib.linux-i686-2.7/pandas/io/tests
copying pandas/io/tests/salary.table -> build/lib.linux-i686-2.7/pandas/io/tests
creating build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/mindex_073.pickle ->
build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/multiindex_v1.pickle ->
build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/iris.csv -> build/lib.linux-i686-2.7/pandas/tests/data
copying pandas/tests/data/unicode_series.csv ->
build/lib.linux-i686-2.7/pandas/tests/data
creating build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/series_daterange0.pickle ->
build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/daterange_073.pickle ->
build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/frame.pickle ->
build/lib.linux-i686-2.7/pandas/tseries/tests/data
copying pandas/tseries/tests/data/series.pickle ->
build/lib.linux-i686-2.7/pandas/tseries/tests/data
running build_ext
building 'pandas._algos' extension
creating build/temp.linux-i686-2.7
creating build/temp.linux-i686-2.7/pandas
creating build/temp.linux-i686-2.7/pandas/src
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/generated.c -o
build/temp.linux-i686-2.7/pandas/src/generated.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro
-Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags
build/temp.linux-i686-2.7/pandas/src/generated.o -L/usr/lib
-lpython2.7 -o build/lib.linux-i686-2.7/pandas/_algos.so
building 'pandas.lib' extension
creating build/temp.linux-i686-2.7/pandas/src/datetime
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/tseries.c -o
build/temp.linux-i686-2.7/pandas/src/tseries.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o
build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/datetime/np_datetime_strings.c
-o build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o
pandas/src/datetime/np_datetime_strings.c: In function �make_iso_8601_datetime�:
pandas/src/datetime/np_datetime_strings.c:1151:5: warning: format
�%Ld� expects argument of type �long long int�, but argument 4 has
type �long int� [-Wformat]
pandas/src/datetime/np_datetime_strings.c:1151:5: warning: format
�%Ld� expects argument of type �long long int�, but argument 4 has
type �long int� [-Wformat]
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro
-Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags
build/temp.linux-i686-2.7/pandas/src/tseries.o
build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime_strings.o
-L/usr/lib -lm -lpython2.7 -o build/lib.linux-i686-2.7/pandas/lib.so
building 'pandas._period' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/plib.c -o
build/temp.linux-i686-2.7/pandas/src/plib.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/datetime/np_datetime.c -o
build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/period.c -o
build/temp.linux-i686-2.7/pandas/src/period.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro
-Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags
build/temp.linux-i686-2.7/pandas/src/plib.o
build/temp.linux-i686-2.7/pandas/src/datetime/np_datetime.o
build/temp.linux-i686-2.7/pandas/src/period.o -L/usr/lib -lpython2.7
-o build/lib.linux-i686-2.7/pandas/_period.so
building 'pandas._sparse' extension
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wformat
-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector
--param=ssp-buffer-size=4 -fomit-frame-pointer -march=i586
-mtune=generic -fasynchronous-unwind-tables -I/usr/include/ncursesw
-DNDEBUG -O2 -g -pipe -Wformat -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4
-fomit-frame-pointer -march=i586 -mtune=generic
-fasynchronous-unwind-tables -g -fPIC
-I/usr/lib/python2.7/site-packages/numpy/core/include
-I/usr/include/python2.7 -c pandas/src/sparse.c -o
build/temp.linux-i686-2.7/pandas/src/sparse.o
gcc -pthread -shared -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro
-Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags
build/temp.linux-i686-2.7/pandas/src/sparse.o -L/usr/lib -lpython2.7
-o build/lib.linux-i686-2.7/pandas/_sparse.so
build/temp.linux-i686-2.7/pandas/src/sparse.o: In function
__pyx_f_6pandas_7_sparse___pow': /home/bob/Downloads/pandas-0.9.0rc2/pandas/src/sparse.c:13907: undefined reference topow'
/home/bob/Downloads/pandas-0.9.0rc2/pandas/src/sparse.c:13907:
undefined reference to `pow'
collect2: ld returned 1 exit status
error: command 'gcc' failed with exit status 1

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GitHubhttps://github.com//issues/1955#issuecomment-8958512.

wesm added a commit that referenced this issue Sep 28, 2012
@wesm
BLD: link against m library in sparse ext too #1955
eb48812
@wesm wesm reopened this Sep 28, 2012
@wesm
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wesm commented Sep 28, 2012

I added another library link. Could you let me know if this fixes the issue? Unfortunately I don't have a platform to test on where this is needed

@blounsbury-usbr
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Thanks! All seems well. Except that this statement from http://pandas.pydata.org/getpandas.html does not seem true:

Stable windows binaries are built on a rotating basis every hour, as long 
as there have been code changes on github since the previous build. 
You can find the latest builds here.

Anyways, I cloned the read-only git version. It installed successfully.

@wesm
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wesm commented Sep 29, 2012

Thanks. The dev builds have been disabled for the last couple of months, need to update the website

@wesm wesm closed this as completed Sep 29, 2012
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