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(neuro) root@5c7844020115:/data# heudiconv -d /data/{subject}/*/*.IMA -s QLAB_BLAST_20180501_123537_169000 -f convertall -c none -o /output INFO: Running heudiconv version 0.5.dev1 INFO: Need to process 1 study sessions INFO: PROCESSING STARTS: {'session': None, 'outdir': '/output/', 'subject': 'QLAB_BLAST_20180501_123537_169000'} INFO: Processing 10699 dicoms INFO: Analyzing 10699 dicoms Traceback (most recent call last): File "/opt/conda/envs/neuro/bin/heudiconv", line 11, in <module> load_entry_point('heudiconv==0.5.dev1', 'console_scripts', 'heudiconv')() File "/opt/conda/envs/neuro/lib/python2.7/site-packages/heudiconv/cli/run.py", line 125, in main process_args(args) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/heudiconv/cli/run.py", line 338, in process_args overwrite=args.overwrite,) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/heudiconv/convert.py", line 159, in prep_conversion grouping=None) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/heudiconv/dicoms.py", line 62, in group_dicoms_into_seqinfos mw = ds.wrapper_from_data(dcm.read_file(filename, force=True)) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/nibabel/nicom/dicomwrappers.py", line 82, in wrapper_from_data csa = csar.get_csa_header(dcm_data) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/nibabel/nicom/csareader.py", line 71, in get_csa_header return read(tag.value) File "/opt/conda/envs/neuro/lib/python2.7/site-packages/nibabel/nicom/csareader.py", line 126, in read MAX_CSA_ITEMS, n_items)) nibabel.nicom.csareader.CSAReadError: Expected <= 199 tags, got 210
The text was updated successfully, but these errors were encountered:
Siemens CSA header: Increase item limit to 400 to allow parsing large…
e7f70b9
…r headers. Resolves nipy#212
e900ca6
fe1e90b
this was fixed in nipy/nibabel#690
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