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2 files changed +24
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lines changed Original file line number Diff line number Diff line change 6
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def test_Unifize_inputs ():
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input_map = dict (args = dict (argstr = '%s' ,
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),
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+ cl_frac = dict (argstr = '-clfrac %f' ,
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+ ),
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environ = dict (nohash = True ,
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usedefault = True ,
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),
@@ -31,14 +33,19 @@ def test_Unifize_inputs():
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),
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out_file = dict (argstr = '-prefix %s' ,
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name_source = 'in_file' ,
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+ name_template = '%s_unifized' ,
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),
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outputtype = dict (),
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+ quiet = dict (argstr = '-quiet' ,
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+ ),
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rbt = dict (argstr = '-rbt %f %f %f' ,
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),
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scale_file = dict (argstr = '-ssave %s' ,
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),
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t2 = dict (argstr = '-T2' ,
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),
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+ t2_up = dict (argstr = '-T2up %f' ,
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+ ),
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terminal_output = dict (deprecated = '1.0.0' ,
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nohash = True ,
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),
Original file line number Diff line number Diff line change @@ -2291,6 +2291,7 @@ class UnifizeInputSpec(AFNICommandInputSpec):
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exists = True ,
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copyfile = False )
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out_file = File (
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+ name_template = '%s_unifized' ,
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desc = 'output image file name' ,
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argstr = '-prefix %s' ,
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name_source = 'in_file' )
@@ -2337,6 +2338,22 @@ class UnifizeInputSpec(AFNICommandInputSpec):
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'b = bottom percentile of normalizing data range, [default=70.0]\n '
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'r = top percentile of normalizing data range, [default=80.0]\n ' ,
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argstr = '-rbt %f %f %f' )
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+ t2_up = traits .Float (
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+ desc = 'Option for AFNI experts only.'
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+ 'Set the upper percentile point used for T2-T1 inversion. '
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+ 'Allowed to be anything between 90 and 100 (inclusive), with '
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+ 'default to 98.5 (for no good reason).' ,
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+ argstr = '-T2up %f' )
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+ cl_frac = traits .Float (
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+ desc = 'Option for AFNI experts only.'
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+ 'Set the automask \' clip level fraction\' . Must be between '
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+ '0.1 and 0.9. A small fraction means to make the initial '
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+ 'threshold for clipping (a la 3dClipLevel) smaller, which '
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+ 'will tend to make the mask larger. [default=0.1]' ,
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+ argstr = '-clfrac %f' )
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+ quiet = traits .Bool (
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+ desc = 'Don\' t print the progress messages.' ,
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+ argstr = '-quiet' )
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class UnifizeOutputSpec (TraitedSpec ):
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