fix: errors in build-container-images.yml

* pin to rocker/tidyverse:4.2
* update Dockerfile to use pak and rspm for package installation
* add workflow_dispatch button

Author: dsweber2

.github/workflows/build-container-images.yml

@@ -2,14 +2,15 @@ name: Build indicator container images and upload to registry
 
 on:
   push:
-    branches: [ main, prod ]
+    branches: [main, prod]
+  workflow_dispatch:
 
 jobs:
   build:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        packages: [ backfill_corrections ]
+        packages: [backfill_corrections]
     steps:
       - name: Checkout code
         uses: actions/checkout@v2

backfill_corrections/Dockerfile

@@ -1,7 +1,7 @@
 FROM gurobi/optimizer:9.5.1 as gurobi
 
 ## Install R and tidyverse
-FROM rocker/tidyverse:latest
+FROM rocker/tidyverse:4.2
 
 WORKDIR /opt/gurobi
 COPY --from=gurobi /opt/gurobi .
@@ -15,22 +15,17 @@ ENV LD_LIBRARY_PATH $GUROBI_HOME/lib
 RUN ln -s -f /usr/share/zoneinfo/America/New_York /etc/localtime
 
 RUN apt-get update && apt-get install -qq -y \
-    libglpk-dev\
+    apt-file \
     python3-venv \
     python3-dev \
     python3-pip
 
-RUN install2.r --error \
-    roxygen2 \
-    Rglpk \
-    argparser
-
+RUN R -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
+RUN R -e 'install.packages(c("rspm"))'
 RUN --mount=type=secret,id=GITHUB_TOKEN \
     export GITHUB_PAT="$(cat /run/secrets/GITHUB_TOKEN)" && \
-    R -e 'devtools::install_version("bettermc", version = "1.1.2")' && \
-    R -e 'devtools::install_github("cmu-delphi/covidcast", ref = "evalcast", subdir = "R-packages/evalcast")' && \
-    R -e 'devtools::install_github(repo="ryantibs/quantgen", subdir="quantgen")' && \
-    R -e 'install.packages(list.files(path="/opt/gurobi/linux64/R/", pattern="^gurobi_.*[.]tar[.]gz$", full.names = TRUE), repos=NULL)'
+    R -e 'rspm::enable(); pak::pkg_install(c("roxygen2", "Rglpk", "argparser", "gfkse/[email protected]", "cmu-delphi/covidcast/R-packages/evalcast@evalcast", "ryantibs/quantgen/quantgen"))'
+RUN R -e 'install.packages(list.files(path="/opt/gurobi/linux64/R/", pattern="^gurobi_.*[.]tar[.]gz$", full.names = TRUE), repos=NULL)'
 
 WORKDIR /backfill_corrections/
 ADD ./delphiBackfillCorrection ./delphiBackfillCorrection/